Dr. Knowledge Or: I Stopped Worrying and Love the Semantic Web
Relaxed keynote for the bioinformatics research group COEUS lab meeting. Semantic Web intro + COEUS Open publication - Free publishing - More coeus Read More
Diseasecard
Rare disease information portal. With a Semantic Web flavor powered by COEUS. http://bioinformatics.ua.pt/dc4/ Read More
ISCB SCS 2011
A knowledge federation strategy for integrating genotype-to-phenotype data July 15 – Vienna, Austria Read More
Internship Labmeeting
WAVe, Semantic Web and The Meaning of Life Talk given and Brookeslab Lab Meeting. It covers mostly WAVe and Semantic Web stuff, the topics I’ve worked with during my internship. Open publication - Free publishing - More wave Read More
GEN2PHEN WAVE
Update: WAVe is now live at http://bioinformatics.ua.pt/WAVe Web Analysis of Variome Experiments Web application to deal with variation information. Time to create mockups, define features and talk to the bosses in Leicester. Alternative titles Web Analysis, Assessment Variome, Variation Experiments Read More
Integration of Variome Data through a Link Discovery Strategy
Pedro Lopes and José Luís Oliveira IX Jornadas de Bioinformática (IX JBI) Lisbon, Portugal, November 2009 Read More
LinkIntegrator: A Link-based Data Integration Architecture
Pedro Lopes, Joel Arrais and José Luís Oliveira International Conference on Knowledge Discovery and Information Retrieval, Institute for Systems and Technologies of Information, Control and Communication (KDIR, IC3K 2009) Madeira, Portugal, October 2009 [http://issuu.com/pedrolopes/docs/linkintegrator] Read More
Arabella: A Topic Driven Web Crawler
Pedro Lopes, David Campos, Carlos Davide Pinto and José Luís Oliveira International Conference on Knowledge Discovery and Information Retrieval, Institute for Systems and Technologies of Information, Control and Communication (KDIR, IC3K 2009) Madeira, Portugal, October 2009 [http://issuu.com/pedrolopes/docs/arabella] Read More
BioWikifier + BioWikifier API
Using ConceptWeb Linker ideas, we could create a simple text parsing mechanism that could be added as an extension to DiseaseCard that would search the original application pages for a list of terms and would then create an interface above them. It would involve changing the original applications but could be used to extend the reality of the integrated applications (whatever they are). Additionally, there could be an API that developers could use... Read More
YouTube Warp
YouTube Warp is an engine designed in Flash that establishes relations among videos connecting them and showing them in a simple relational map. Using the same principle we can create a visual navigation inside biology concepts. BioWarp could use GeNS database to establish connections between concepts. The map would then be shown as a component of the interface that would enable linking to pages in the main workspace. It could be a simple idea to... Read More