RECOMB2010
WAVe at RECOMB2010 Great event, despite the overloaded focus on molecular biology. Definitely not my most domain. Great discussion on Genomics and Personalized Medicine. DiseaseCard will fit into this problem! Must write on this later. As for the WAVe poster, it was terribly localized! A dark corner… basically only my neighbors got convinced and liked my explanation. One even congratulated me for the look, which resulted in a short discussion... Read More
An Integrated View for Human Variome Information
Pedro Lopes and José Luís Oliveira 14th International Conference on Research in Computational Molecular Biology (RECOMB2010) Lisbon, Portugal, August 2010 Read More
BioABC
Biological Augmented Browsing Connector Explore the ideas of augmented browsing in life sciences-related applications. Key topics: REST based web service accepts LSRN identifiers HTML output according to provided identifier type JavaScript to trigger service execution JS library + CSS Adaptable to any application Read More
WAVe
2010 begun with a new challenge: plan and develop, as fast as possible, a simple variant integration application based on DiseaseCard‘s navigation concept. The idea was to reach GEN2PHEN‘s goals with a new DiseaseCard-like application focused on integrating LSDBs (no one does it!) and variants contained in those LSDBs. Moreover, relevant gene-related information (pathways, proteins…) should be provided in the elegant navigation... Read More
WAVe database model
First stable version of the database model is complete. Upcoming issues: how to crawl the databases to get the variants where is GEN2PHEN lsdb listing how to get variation metadata like publications and so on, will a specific parser for each database be required? develop the final app in C# or Java? C# would be faster… Java stripes? WAVe database model 0.1 Read More
WAVe 1 – 0 Coeus
WAVe has beaten Coeus in a closed match yesterday afternoon… A top-2-bottom perspective should be followed and development in WAVe should kick off ASAP There is no information available on how will coeus and its semantic web developments recover from such a defeat… Read More
LinkIntegrator: A Link-based Data Integration Architecture
Pedro Lopes, Joel Arrais and José Luís Oliveira International Conference on Knowledge Discovery and Information Retrieval, Institute for Systems and Technologies of Information, Control and Communication (KDIR, IC3K 2009) Madeira, Portugal, October 2009 [http://issuu.com/pedrolopes/docs/linkintegrator] Read More